diff -r ecf0e1c4f2f2 -r 02b74bd4373f scripts/build/internals.sh
--- a/scripts/build/internals.sh	Sun Sep 06 17:58:05 2009 +0200
+++ b/scripts/build/internals.sh	Wed Mar 17 00:21:57 2010 +0100
@@ -90,5 +90,8 @@
         CT_DoForceRmdir "${CT_DEBUGROOT_DIR}/"{,usr/}{man,info}
     fi
 
+    # Remove headers installed by native companion libraries
+    CT_DoForceRmdir "${CT_PREFIX_DIR}/include"
+
     CT_EndStep
 }